BibTeX, biblatex and biber ⇒ achemso package - some bib entries do not work

[bonimba]

Hi,
I am using the 'achemso' package to write a paper, and I have had some troubles with @inproceedings and @misc entries. I am using TeXMaker as a text editor, and when I compile 'bibtex', I get warnings (not errors) stating that "this entry is not style-file defined", and when I look at the corresponding references in the PDF document, those are incomplete, even though they appear there.

This is the preamble of my document:

Code: Select all

\documentclass[journal=jacsat,manuscript=article]{achemso}

% default formatting: no title in references...but required in the QE format 
%\setkeys{acs}{articletitle = true}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Place any additional packages needed here.  Only include packages
%% which are essential, to avoid problems later.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\usepackage[version=3]{mhchem} % Formula subscripts using \ce{}
%\usepackage{achemso}
\usepackage{xr}
\externaldocument[SI-]{Supp_Info}

and this is the bibtex entry I cannot get to work

Code: Select all

	@InProceedings{McGibbon_ICML14_HMM,
	author = {R. T. McGibbon and B. Ramsundar and M. M. Sultan and G. Kiss and V. S. Pande},
	title = {Understanding Protein Dynamics with L1-Regularized Reversible Hidden Markov Models},
	booktitle = {Proceedings of the 31st International Conference on Machine Learning}
	}

no matter how I swap the different elements, or if I add the year. The only thing I get in the pdf are the authors and the title, but no 'BOOKTITLE'.

I really hope somebody can help.
Thanks,
Lorenzo

[Johannes_B]

I completed your example and it works for me, there is something else going on in your file. A good way to find the cause is preparing a minimal working example. The source of the behaviour will become obvious, and if its not, i can see what you see when you post the code.

Code: Select all

\begin{filecontents}{\jobname.bib}
	@InProceedings{McGibbon_ICML14_HMM,
		author = {R. T. McGibbon and B. Ramsundar and M. M. Sultan and G. Kiss and V. S. Pande},
		title = {Understanding Protein Dynamics with L1-Regularized Reversible Hidden Markov Models},
		booktitle = {Proceedings of the 31st International Conference on Machine Learning}
	}
\end{filecontents}
\documentclass[journal=jacsat,manuscript=article]{achemso}

	% default formatting: no title in references...but
	% required in the QE format
	%\setkeys{acs}{articletitle = true}
\usepackage[version=3]{mhchem}
\title{walzing Wombats are fun}
\author{silly squirrel}
\begin{document}
\cite{McGibbon_ICML14_HMM}
\bibliography{\jobname}
\end{document}

[bonimba]

I copied & pasted the minimal code you prepared, and and I still cannot get the bibtex element correct. When it comes to compiling, I still get the warning you see in the bottom of the screenshot attached.

[Johannes_B]

Please add `\listfiles` above the very first line of your tex-file and upload the log. I bet your version of achemso is very old, your other packages might be very old as well.

I think an update of the distribution will fix the issue.


btw: Please add code as text inside a code box, not as a screenshot. Do you expect us to type everything once more?

[bonimba]

Oh gosh, you're totally right...the screenshot wasn't actually the smartest thing ever
This is the log file upon adding the \listfiles and compiling. Anything useful?
Thanks a lot!

P.S. In the meantime I will upload my distribution

Code: Select all

This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012) (format=pdflatex 2012.6.30)  24 JUL 2015 14:01
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**test_bibtex.tex
(./test_bibtex.tex
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, ge
rman-x-2012-05-30, ngerman-x-2012-05-30, afrikaans, ancientgreek, ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis
h, french, friulan, galician, german, ngerman, swissgerman, monogreek, greek, h
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kurmanji, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk,
 polish, portuguese, romanian, romansh, russian, sanskrit, serbian, serbianc, s
lovak, slovenian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, 
welsh, loaded.

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File: t1phv.fd 2001/06/04 scalable font definitions for T1/phv.
)
LaTeX Font Info:    Font shape `T1/phv/bx/n' in size <12> not available
(Font)              Font shape `T1/phv/b/n' tried instead on input line 17.
LaTeX Font Info:    Font shape `T1/phv/b/n' will be
(Font)              scaled to size 10.79993pt on input line 17.
LaTeX Font Info:    Font shape `T1/phv/bx/n' in size <20.74> not available
(Font)              Font shape `T1/phv/b/n' tried instead on input line 17.
LaTeX Font Info:    Font shape `T1/phv/b/n' will be
(Font)              scaled to size 18.66588pt on input line 17.
LaTeX Font Info:    Font shape `T1/phv/m/n' will be
(Font)              scaled to size 12.9599pt on input line 17.


Class achemso Warning: No affiliation given for author
(achemso)              silly squirrel on input line 17.


Class achemso Warning: No affiliations: at least one affiliation is needed on i
nput line 17.

LaTeX Font Info:    Font shape `T1/phv/m/n' will be
(Font)              scaled to size 10.79993pt on input line 17.

Class achemso Warning: No e-mail given:
(achemso)              at lest one author must have a contact e-mail on input l
ine 17.

LaTeX Font Info:    Try loading font information for OT1+ztmcm on input line 17
.
(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/ot1ztmcm.fd
File: ot1ztmcm.fd 2000/01/03 Fontinst v1.801 font definitions for OT1/ztmcm.
)
LaTeX Font Info:    Try loading font information for OML+ztmcm on input line 17
.

(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/omlztmcm.fd
File: omlztmcm.fd 2000/01/03 Fontinst v1.801 font definitions for OML/ztmcm.
)
LaTeX Font Info:    Try loading font information for OMS+ztmcm on input line 17
.

(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/omsztmcm.fd
File: omsztmcm.fd 2000/01/03 Fontinst v1.801 font definitions for OMS/ztmcm.
)
LaTeX Font Info:    Try loading font information for OMX+ztmcm on input line 17
.

(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/omxztmcm.fd
File: omxztmcm.fd 2000/01/03 Fontinst v1.801 font definitions for OMX/ztmcm.
)
LaTeX Font Info:    Try loading font information for OT1+ptm on input line 17.

(/usr/local/texlive/2012/texmf-dist/tex/latex/psnfss/ot1ptm.fd
File: ot1ptm.fd 2001/06/04 font definitions for OT1/ptm.
)
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <12> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 17.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <9> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 17.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <7> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 17.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <10> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 17.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <7.4> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 17.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <6> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 17.
LaTeX Font Info:    Calculating math sizes for size <7.4> on input line 17.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <5.47603> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 17.
LaTeX Font Info:    Font shape `OT1/ptm/bx/n' in size <4.44003> not available
(Font)              Font shape `OT1/ptm/b/n' tried instead on input line 17.

(./test_bibtex.bbl
LaTeX Font Info:    Font shape `T1/ptm/bx/n' in size <14.4> not available
(Font)              Font shape `T1/ptm/b/n' tried instead on input line 4.
) [1

{/usr/local/texlive/2012/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] (./test
_bibtex.aux)

 *File List*
 achemso.cls    2012/05/08 v3.7a Submission to ACS journals
 article.cls    2007/10/19 v1.4h Standard LaTeX document class
  size12.clo    2007/10/19 v1.4h Standard LaTeX file (size option)
 xkeyval.sty    2008/08/13 v2.6a package option processing (HA)
 xkeyval.tex    2008/08/13 v2.6a key=value parser (HA)
mciteplus.sty    2008/09/30 v1.1 enhanced mcite
 fontenc.sty
   t1enc.def    2005/09/27 v1.99g Standard LaTeX file
geometry.sty    2010/09/12 v5.6 Page Geometry
   ifpdf.sty    2011/01/30 v2.3 Provides the ifpdf switch (HO)
  ifvtex.sty    2010/03/01 v1.5 Detect VTeX and its facilities (HO)
 ifxetex.sty    2010/09/12 v0.6 Provides ifxetex conditional
  helvet.sty    2005/04/12 PSNFSS-v9.2a (WaS) 
 caption.sty    2012/02/19 v3.2f Customizing captions (AR)
caption3.sty    2012/01/12 v1.4b caption3 kernel (AR)
 courier.sty    2005/04/12 PSNFSS-v9.2a (WaS) 
   float.sty    2001/11/08 v1.3d Float enhancements (AL)
graphicx.sty    1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR)
graphics.sty    2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR)
    trig.sty    1999/03/16 v1.09 sin cos tan (DPC)
graphics.cfg    2010/04/23 v1.9 graphics configuration of TeX Live
  pdftex.def    2011/05/27 v0.06d Graphics/color for pdfTeX
infwarerr.sty    2010/04/08 v1.3 Providing info/warning/error messages (HO)
 ltxcmds.sty    2011/11/09 v1.22 LaTeX kernel commands for general use (HO)
mathptmx.sty    2005/04/12 PSNFSS-v9.2a Times w/ Math, improved (SPQR, WaS) 
setspace.sty    2011/12/19 v6.7a set line spacing
     url.sty    2006/04/12  ver 3.3  Verb mode for urls, etc.
  jacsat.cfg    2012/05/08 v3.7a achemso configuration: J. Am. Chem. Soc.
  natbib.sty    2010/09/13 8.31b (PWD, AO)
 natmove.sty    2010/01/15 v1.1a Automatic citation moving with natbib
  mhchem.sty    2011/06/03 v3.11 for typesetting chemical formulae
  ifthen.sty    2001/05/26 v1.1c Standard LaTeX ifthen package (DPC)
    calc.sty    2007/08/22 v4.3 Infix arithmetic (KKT,FJ)
  twoopt.sty    2008/08/11 v1.5 Definitions with two optional arguments (HO)
 amsmath.sty    2000/07/18 v2.13 AMS math features
 amstext.sty    2000/06/29 v2.01
  amsgen.sty    1999/11/30 v2.0
  amsbsy.sty    1999/11/29 v1.2d
  amsopn.sty    1999/12/14 v2.01 operator names
   t1ptm.fd    2001/06/04 font definitions for T1/ptm.
supp-pdf.mkii
pdftexcmds.sty    2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO)
ifluatex.sty    2010/03/01 v1.3 Provides the ifluatex switch (HO)
epstopdf-base.sty    2010/02/09 v2.5 Base part for package epstopdf
  grfext.sty    2010/08/19 v1.1 Manage graphics extensions (HO)
kvdefinekeys.sty    2011/04/07 v1.3 Define keys (HO)
kvoptions.sty    2011/06/30 v3.11 Key value format for package options (HO)
kvsetkeys.sty    2012/04/25 v1.16 Key value parser (HO)
etexcmds.sty    2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
epstopdf-sys.cfg    2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Live
   t1phv.fd    2001/06/04 scalable font definitions for T1/phv.
ot1ztmcm.fd    2000/01/03 Fontinst v1.801 font definitions for OT1/ztmcm.
omlztmcm.fd    2000/01/03 Fontinst v1.801 font definitions for OML/ztmcm.
omsztmcm.fd    2000/01/03 Fontinst v1.801 font definitions for OMS/ztmcm.
omxztmcm.fd    2000/01/03 Fontinst v1.801 font definitions for OMX/ztmcm.
  ot1ptm.fd    2001/06/04 font definitions for OT1/ptm.
test_bibtex.bbl
 ***********

 ) 
Here is how much of TeX's memory you used:
 5704 strings out of 493488
 86208 string characters out of 3141326
 155377 words of memory out of 3000000
 8884 multiletter control sequences out of 15000+200000
 56020 words of font info for 87 fonts, out of 3000000 for 9000
 957 hyphenation exceptions out of 8191
 60i,8n,94p,262b,305s stack positions out of 5000i,500n,10000p,200000b,50000s
{/usr/local/texlive/2012/texmf-dist/fonts/enc/dvips/base/8r.enc}</usr/local/t
exlive/2012/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/local/te
xlive/2012/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb></usr/local/texlive/2
012/texmf-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/local/texlive/2012/tex
mf-dist/fonts/type1/urw/times/utmb8a.pfb></usr/local/texlive/2012/texmf-dist/fo
nts/type1/urw/times/utmr8a.pfb>
Output written on test_bibtex.pdf (1 page, 40422 bytes).
PDF statistics:
 29 PDF objects out of 1000 (max. 8388607)
 20 compressed objects within 1 object stream
 0 named destinations out of 1000 (max. 500000)
 1 words of extra memory for PDF output out of 10000 (max. 10000000)

[Johannes_B]

Your version of achemso is from 2012, the recent one is from april this year. Maybe in 2012, there wasn't support for this entry-type.

[bonimba]

Hi,
I just updated the TexLive distribution, and bib entries work just fine now.

Thanks again for the help!