I'm putting this in the TeX Live forum because I am guessing this might be a package incompatibility issue.
I'm using TeXmaker with TeX Live 2013 on Windows 7, fully updated. I have looked around a lot for this issue but couldn't find a working fix. I'm using a minimal example I found online - it is behaving the same way in my main document, thus I think it is a valid example and a fix would work on all documents on my machine.
my build command is this:
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pdflatex -synctex=1 -interaction=nonstopmode %.tex
biber %
pdflatex -synctex=1 -interaction=nonstopmode %.tex
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\listfiles
\documentclass{article}
\usepackage[backend=biber]{biblatex}
\usepackage{filecontents}
\begin{filecontents*}{\jobname.bib}
@misc{A01,
author = {Author, A.},
year = {2001},
title = {Alpha},
}
\end{filecontents*}
\addbibresource{\jobname.bib}
\begin{document}
Some text \autocite{A01}.
\printbibliography
\end{document}[/latex]
debug.blg
[code=none][0] Config.pm:318> INFO - This is Biber 1.8
[0] Config.pm:321> INFO - Logfile is 'debug.blg'
[74] biber-MSWIN:272> INFO - === %a %b %e, %Y, %H:%M:%S
[383] Utils.pm:185> ERROR - Cannot find control file 'debug.bcf'! - did you pass the "backend=biber" option to BibLaTeX?
[383] Biber.pm:109> INFO - ERRORS: 1