This code works for me and prints the Omega:

- Omega.png (3.09 KiB) Viewed 4443 times
I extended your code snippet to make it compilable:
Code: Select all
\documentclass{article}
\usepackage{amsmath}
\begin{document}
\begin{align}
v_3 = [{\it{l} \tau_3 + I_z \dot{\psi} \dot{ \phi} - (J_{t} {\Omega}
+ I_x\dot{\phi}) \dot{ \psi}}]/I_y \notag\\
\end{align}
\end{document}
You see, the problem is not in the code which you posted. Please post a compilable
minimal working example, which shows the problem. That's generally recommendable. Otherwise it's hard to help. For example, nobody knows your document class and used packages yet, not even which math environment you used.
Stefan