First post in this Forum...

I am concluding my Ph.D. Thesis, and I have changed recently from a Windows XP environment using Latex, to the Ubuntu OS (version 9.1). I am using the inbuilt Tex Live distribution, prepared by Synaptic, and Texmaker as the editor. I am also using IEEEtran for bibliography style and the trackchanges package. These are not installed as they should, just on the folder where I have the preamble and the main tex files.
I am also using a class file prepared by other colleagues here at the TU Delft, given that I am not a "power user" of Latex, and do not know about configuring such files.
Anyway, I have managed to install properly the glossaries package, checking the local and distribution trees through texmf.cnf and then making a texhash. The sample of glossaries did work well, and a Glossay entry was printed, so makeglossaries is working, and of course, Perl scripting!
But when I tried some initial entries on my Thesis, I have received the error message: "No \@istfilename found" after running makeglossaries.
There is a .glo and a .ist file in my main folder, but there is no ist entry in the .aux file.
Note: my main latex file is working by including all the other files, so it starts by including the preamble file, and then each chapter and the annexes. The concluding commands build the bibliography.
Note2: the glossary entries and acronyms I have used so far are showing up properly in the final pdf, but I am using a non standard build process. This goes from producing a dvi, then dvips and finally generating the pdf from my CUPS-pdf printer.
Any clues as to the reason for minimalgls has worked but my Thesis don't?
