LaTeX.org

Thanks for looking into this Axel, I will try as you suggested.

Example uploaded here: https://www.yousendit.com/dl?phi_action=app/orchestrateDownload&rurl=https%253A%252F%252Fwww.yousendit.com%252Ftransfer.php%253Faction%253Dbatch_download%2526batch_id%253DUFVxNWNtSys4NVZjR0E9PQ . Compile using

latex ryesample.tex
bibtex ryesample
latex ryesample
latex ...

I am compiling my thesis using latex/bibtex/latex/latex and all the subfigures return this error:

! Package caption Error: No float type 'subfloat' defined.
See the caption package documentation for explanation.
Type H <return> for immediate help.
...
l.54 ...{\ignorespaces Programmable counter ...