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For anyone else late to the party who had the same question about LyX:

To change this sort of numbering in the LyX interface, you have to either change the LyX layout file used in your LyX document (Document > Settings > Document Class > Document Class), or you have to add it as a local layout ...

Thanks for this great tutorial! A quick update for those like me who are late to the party. I'm using LyX 2.3.5.2 on Windows 10.

The pandoc-citeproc package is no longer maintained[1], and its functionality has been included in pandoc's newest releases.

Using the converter code in juliendutant's ...