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Thank you very much for the reply.

I realized my mistake not running BibTeX. For future reference for someone stumbling in this thread, in TeXmaker:
Options->Configure Texmaker->Quick Build->PdfLaTeX+Bib(La)TeX+PdfLaTeX (x2) + View Pdf

I've managed to run a sample code:

\documentclass{article ...

Hello,

I've started using the Masters/Doctoral Thesis template and I find it absolutely great! Thank you for that and for keeping an updated forum.

I have one problem concerning the bibliography.
I have the latest JabRef installed with BibLaTeX mode on, I reinstalled the latest MikTeX and am using ...