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Apologies for taking so long to respond. Thanks for the comment. I have uploaded the log file. As you can see, the document uses over 50 packages. Maybe there is something obvious.

I may try to strip out pieces one by one, to identify the issue, and make a simple complete example.

I have a fairly complex document, made of a set of files to typeset. I'm using WinShell3.3 and MiKTeX 2.7. I am using a .cls file that loads report.cls and modifies page layout using fancyhdr. I get the following warning message at the end of the job (which produces a complete and OK document BTW ...

Hi all,
I've used LaTeX on and off for a long time, but have not been concerned with the inner workings of cls, sty, or bst files. Now I told a number of students (6) that they had to write their theses using LaTeX. I found that my university did not have LaTeX format. A .cls file developed by ...

I am using natbib with plainnat, and caption.
\usepackage[numbers]{natbib}
\usepackage[format=hang,hangindent=0pt]{caption}
.
.
.
\bibliographystyle{plainnat}
\bibliography{MS}

I have problems with citations in captions. This code works some of the time:
\begin{table}[ht]
\caption[Standard model ...

Thanks, that works.

However, it seems odd that the default is to change case, rather than keep it unchanged.
Some journals I work with provide bibtex entries, so I have to edit them.

Thanks again.

I need to make article titles in bibliographies with proper names and acronyms. Plainnat seems to insist on making everything lower case. So "Microwave structure in Sagittarius from WMAP" might become "Microwave structure in sagittarius from wmap." How can I prevent this (and why does plainnat ...

I am trying to install MiKTeX 2.7. Net Installer would not work at all, so I downloaded the Basic version file and installed that.

I now need revtex4 and natbib (and maybe others). I downloaded revtex4 from http://www.aps.org and I had a copy of natbib.cab from the previous install.

I have tried ...