I have a small problem with LyX to which I was unable to find an answer.
I am writing my PhD thesis with LyX. The document has grown quite large with lots of figures, references and equations. If I try to create a PDF of the whole document using PDFLaTeX a message appears several times which says:
pdflatex -synctex=-1 "Thesis.tex"
has not yet completed.
Do you want to stop it?
I have to click "Let it run" several times to complete the document. It is really annoying. However, it only happens if I create the whole document. The individual chapters can be created without this message appearing. Thus, I think it is a timeout and has something to do with the size of the document.
Is it possible to decrease or even disable the timeout for PDFLaTeX?